Introduction to Whole Cell Modeling.- Foundations of E‑Cell Simulation Environment Architecture.- Distributed Cell Biology Simulations with the E‑Cell System.- A Guide to Modeling Reaction‑Diffusion of Molecules with the E‑Cell System.- A Model Library of Bacterial Chemotaxis on E‑Cell System.- Electrophysiological Simulation of Developmental Changes in Action Potentials of Cardiomyocytes.- Simulation of Human Erythrocyte Metabolism.- Dynamic Kinetic Modeling of Mitochondrial Energy Metabolism.- A Computational Model of the Hepatic Lobule.- Decoding the Signaling Mechanism of Toll‑Like Receptor 4 Pathways in Wild Type and Knockouts.- Modeling of Hsp70‑Mediated Protein Refolding.
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