The traditional approach to parallel processing has been to use Massively Parallel Processors (MPPs). An alternative design is commercial-off-the-shelf (COTS) workstations connected to high-speed networks. These networks of workstations (NOWs) typically have faster processors, heterogeneous environments, and most importantly, offer a lower per node cost. This thesis compares the performance of MPPs and NOWs for the two-dimensional fast Fourier transform (2-D FFT). Three original, high-performance, portable 2-D FFTs have been implemented: the vector-radix, row-column and pipeline. The performance of these algorithms was measured on the Intel Paragon, IBM SP2 and the AFIT NOW, which consists of 6 Sun Ultra workstations connected via the Myrinet switch. Three important conclusions have been made. First, the pipeline was the best algorithm on all platforms by approximately 30%. Second, the NOW was nearly equal to the SP2 in runtime, while the Paragon did not outperform a single Ultra workstation. As a result, NOWs are a competitive platform for this application. Finally, only limited speedup was achieved on the SP2 (2.9) with 32 processors, and AFIT NOW (1.9) with 5 processors. It appears that the changing platform communication-to-computation ratio has made the 2-D FFT a less viable candidate for parallelization, given its high communication overhead.
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